PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022685-PA
Common NameHd1, OsI_22512
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CO-like
Protein Properties Length: 441aa    MW: 48400.6 Da    PI: 4.987
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022685-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.2e-063375440
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      r C+ +   +   +C+ +  +lC++C    H        H++v
  BGIOSGA022685-PA 33 RPCDGCRAAPSVVYCRADAAYLCASCDARVHAAnrvasrHERV 75
                      67**************************999556677778766 PP

2zf-B_box279.5e-0975120342
          zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                        r+C+ +e+ ++ l C+ +   lC  C ++ H+       H++vp+
  BGIOSGA022685-PA  75 VRVCEACERAPAALACRADAAALCVACDVQVHSAnplarrHQRVPV 120
                       689*****************************66899999*99986 PP

3CCT31.18.5e-12338364127
               CCT   1 ReaallRYkeKrktRkFeKkirYesRK 27 
                       Rea++lRY+eK+k RkFeK+irYe+R+
  BGIOSGA022685-PA 338 REARVLRYREKKKARKFEKTIRYETRR 364
                       9*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-73077IPR000315B-box-type zinc finger
CDDcd000214.18E-83377No hitNo description
PROSITE profilePS5011910.1533577IPR000315B-box-type zinc finger
PROSITE profilePS5011911.44873120IPR000315B-box-type zinc finger
PfamPF006431.7E-775120IPR000315B-box-type zinc finger
SMARTSM003361.0E-978120IPR000315B-box-type zinc finger
PfamPF062037.7E-7338364IPR010402CCT domain
PROSITE profilePS510178.72338380IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MNYNFGGNVF DQEVGVGGEG GGGGEGSGCP WARPCDGCRA APSVVYCRAD AAYLCASCDA  60
RVHAANRVAS RHERVRVCEA CERAPAALAC RADAAALCVA CDVQVHSANP LARRHQRVPV  120
APLPAITIPA TSVLAEAVVA TATVLGDKDE EVDSWLLLSK DSDNNNNNNN NNDNDNKDNN  180
NSNSSNNGMY FGEVDEYFDL VGYNSYYDNR IENNQDQQYG MHEQQEQQQQ QQEMQKEFAE  240
KEGSECVVPS QITMLSEQQH SGYGVVGADQ AASMTAGVSA YTDSISNSIS FSSMEAGIVP  300
DSTVIDMPNS RILTPAGAIN LFSGPSLQMS LHFSSMDREA RVLRYREKKK ARKFEKTIRY  360
ETRRMQRHDP GSRAVSPRDQ MCRSKWTRCS PLQLYLTVAM VLFHGSDGTH ETLSYRHIYG  420
DLLSSNNIDP VGVVLDNLCY E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.11890.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0418380.0AB041838.1 Oryza sativa Japonica Group mRNA for Hd1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641799.10.0PREDICTED: zinc finger protein HD1
SwissprotQ9FDX80.0HD1_ORYSJ; Zinc finger protein HD1
TrEMBLB8B0K30.0B8B0K3_ORYSI; Hd1 protein
STRINGBGIOSGA022685-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56223140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.14e-52CONSTANS-like 2
Publications ? help Back to Top
  1. Ebana K, et al.
    Uncovering of major genetic factors generating naturally occurring variation in heading date among Asian rice cultivars.
    Theor. Appl. Genet., 2011. 122(6): p. 1199-210
    [PMID:21229229]